Okay, we have still snow in Finland, but still, one can feel the Spring already looming behind the clouds. And in the spring there will also be again plenty of musicians here and there. I haven’t taken this video here, I ran into it on YouTube, and it is somewhat an attunement for spring!
A recipe that somewhat had its origin in a remaining food, but it turned out to be rather good.
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During the last two weeks, I updated the bitools container twice. Two new tools were added to it:
1. velvet
An easy to apply de-novo assembler that I use for metagenome studies
2. Bandage
A tool to visualize the graphs that are provided from velvet
During the last days I noticed a really nice book that gives an updated respective a refreshment on statistical inference. It is ‘Computer Age Statistical Inference: Algorithms, Evidenve and Data Science’ by Bradley Efron and Trevor Hastie
On the webpage of Trevor Hastie is even a download link to the pdf of the book, I can highly recommend it!
I updated the docker container that I maintain (bitools) to keep all the bioinformatics tools together that I recently use. Yesterday I added the tool FEELnc to it, a tool to detect lncRNAs from RNA-seq data.
UPDATE: Apparently there was an issue with the Forkmanages perl module in the docker container, I fixed that on 7.12.2017 and udated the docker image v0.1.6 on Docker Hub.