List of publications

List of publications

Publications in peer-reviewed journals

    1. Fischer, D., Berro, A., Nordhausen, K., Ruiz-Gazen, A. (2019): REPPLab: Detecting Groups and Outliers Using Exploratory Projection Pursuit. Communications in Statistics – Simulation and Computation. https://doi.org/10.1080/03610918.2019.1626880.
    2. Dillard, K., Hytönen, M.K., Fischer, D., Tanhuanpää, K., Lehti, M., Sironen, A., Anttila, M. (2018): A splice site variant in INPP5E causes diffuse cystic renal dysplasia and hepatic fibrosis in dogs. PLoS ONE 13(9): e0204073. https://doi.org/10.1371/journal.pone.0204073.
    3. Iso-Touru, T., Pesonen, M., Fischer, D., Huuskonen, A., Sironen, A. (2018): Validation of the effect of CAPN1 and CAST gene variants on meat quality traits in Finnish Aberdeen Angus and Nordic Red Cattle populations. Agricultural and Food Science, 27(4), 227–231. https://doi.org/10.23986/afsci.75125.
    4. Tuiskula-Haavisto, M., Honkatukia, M., Dunn, I.C., Bain, M.M., De Koning, D.J., Preisinger, R., Schmutz, M., Arango, J., Fischer, D., Vilkki, J. (2018): Validated QTL for egg shell quality in experimental and commercial laying hens. Animal Genetics. doi: https://doi.org/10.1111/age.12671.
    5. Fischer, D. (2017): The R-package GenomicTools for multifactor dimensionality reduction and the analysis of (exploratory) Quantitative Trait Loci. Computer Methods and Programs in Biomedicine, 151, 171–177. https://doi.org/10.1016/j.cmpb.2017.08.012
    6. Tapio,I., Fischer,D., Blasco,L., Tapio,M., Wallace,R.J., Bayat,A.R., Ventto,L., Kahala,M., Negussie,E., Shingfield,K.J., Vilkki,J. (2017): Taxon abundance, diversity, co-occurrence and network analysis of the ruminal microbiota in response to dietary changes in dairy cows. PLoS ONE 12(7): e0180260. https://doi.org/10.1371/journal.pone.0180260.
    7. Fischer, D., Honkatukia,M., Tuiskula-Haavisto,M., Nordhausen,K., Cavero,D., Preisinger,R., Vilkki,J. (2017): Subgroup Detection in Genotype Data using Invariant Coordinate Selection. BMC Bioinformatics, 18(173), 1–9. https://doi.org/10.1186/s12859-017-1589-9.
    8. Da Ros, M., Lehtiniemi, T., Olotu, O., Fischer, D., Zhang, F.-P., Vihinen, H., Jokitalo, E., Sironen, A., Toppari, J., Kotaja, N. (2017): FYCO1 and autophagy control the integrity of the haploid male germ cell-specific RNP granules. Autophagy, 13(2), 302–321.  https://doi.org/10.1080/15548627.2016.1261319
    9. Spiliopoulos, S., Hergesell, V., Fischer, D., Koerfer, R., Tenderich, G. (2016):Applicability of Cardiogoniometry as a non- invasive Screening Tool for the Detection of Graft Vasculopathy in Heart Transplant Recipients. Interactive CardioVascular and Thoracic Surgery. https://doi.org/10.1093/icvts/ivw237.
    10. Nurminen, R., Rantapero, T., Chong, W.S., Fischer, D., Lehtonen, R., Tammela, T.L.J., Nykter, M., Visakorpi, T., Wahlfors, T., Schleutker, J. (2016): Expressional profiling of prostate cancer risk SNPs at 11q13.5 identifies DGAT2 as a new target gene. Genes, Chromosomes and Cancer, 55(8), 661-673. https://doi.org/10.1002/gcc.22368.
    11. Tapio,I., Shingfield,K.J., McKain,N., Bonin,A., Bayat,A., Fischer,D., Vilkki,J., Taberlet,P., Snelling,T.J., Wallace, R.J. (2016): Oral Samples as Non-Invasive Proxies for Assessing the Composition of the Rumen Microbial Community. PLoS ONE 11(3): e0151220. https://doi.org/10.1371/journal.pone.0151220.
    12. Fischer, D., Nordhausen, K. and Taskinen, S. (2015): Publication and Coauthorship Networks of Hannu Oja. Modern Nonparametric, Robust and Multivariate Methods – Festschrift in Honour of Hannu Oja. pp.7-31. https://doi.org/10.1007/978-3-319-22404-6. Springer, Heidelberg
    13. Bruford, M.W., Ginja, C., Hoffmann, I., Joost, S., Orozco-terWengel, P. et al. (2015): Prospects and Challenges for the Conservation of Farm Animal Genomic Resources, 2015-2025. Frontiers in Genetics 6(314). https://doi.org/10.3389/fgene.2015.00314
    14. Fischer, D., Laiho, A., Gyenesei, A., Sironen, A. (2015): Identification of reproduction related gene mutations using RNAseq in the Large White pig population. G3: Genes, Genomes, Genetics. July 1, 2015 vol. 5 no. 7 1351-1360. https://doi.org/10.1534/g3.115.018382.
    15. Fischer, D., Oja, H. (2015): Mann-Whitney Type Tests for Microarray Experiments: The R Package gMWT. Journal of Statistical Software, 65(9). https://doi.org/10.18637/jss.v065.i09.
    16. Fischer, D., Wahlfors, T., Mattila, H., Oja, H., Tammela, T.L.J, Schleutker, J. (2015): MiRNA Profiles in Lymphoblastoid Cell Lines of Finnish Prostate Cancer Families. PLoS ONE 10(5): e0127427. https://doi.org/10.1371/journal.pone.0127427.
    17. Laitinen, V.H., Rantapero, T., Fischer, D., Vuorinen, E.M. , Tammela, T.L.J., Wahlfors, T., PRACTICAL Consortium, Schleutker, J. (2014): Fine-mapping the 2q37 and 17q11.2-q22 Loci for Novel Genes and Sequence Variants Associated with a Genetic Predisposition to Prostate Cancer. International Journal of Cancer, 136(10), 2316-2327. https://doi.org/10.1002/ijc.29276.
    18. Sironen, A., Fischer, D., Laiho, A., Gyenesei, A., Vilkki, J. (2014): A recent L1 insertion within SPEF2 gene is associated with changes in PRLR expression in sow reproductive organs. Animal Genetics, 45(4), 500-507. https://doi.org/10.1111/age.12153.
    19. Fischer, D., Oja, H., Schleutker, J., Sen, P.K. and Wahlfors, T. (2014): Generalized Mann-Whitney Type Tests for Microarray Experiments. Scandinavian Journal of Statistics, 41(3), 672-692. https://doi.org/10.1111/sjos.12055.
    20. Siltanen, S., Fischer, D., Rantapero, T., Laitinen, V., Mpindi, J.P., Kallioniemi, O., Wahlfors, T., Schleutker, J. (2013): ARLTS1 and Prostate Cancer Risk – Analysis of Expression and Regulation. PLoS ONE 8(8): e72040. https://doi.org/10.1371/journal.pone.0072040.

Manuscripts accepted for publication

    1. Fischer, D., Mosler, K., Nordhausen, K., Möttönen, J., Pokotylo, O., and Vogel, D.: The OjaNP Package: Theoretical Background of the R-Package OjaNP. Accepted for publication in Journal of Statistical Software.

Submitted Manuscripts

    1. Fischer, D., Sironen, A.: Identification of novel transcripts with orthologs across species using the R-package hoardeR.
    2. Fischer, D., Nordhausen, K. and Oja, H.: Linear Dimension Reduction and Bioinformatics Data.
    3. Fischer, D.: Performing QTL and eQTL analyses with the R-package GenomicTools.
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