R-Packages

R-Packages

There are a few R-packages where I am maintainer or to where I contributed:

GenomicTools: A loose collection of tools for the analysis of expression and genotype data, currently with the main focus on (e)QTL and MDR analysis.

Project: http://genomictools.danielfischer.name
Cran: https://cran.r-project.org/web/packages/GenomicTools/
GitHub: https://github.com/fischuu/GenomicTools/
Publication: http://www.sciencedirect.com/science/article/pii/S0169260716308549

 

gMWT: Generalized Mann-Whitney type tests based on probabilistic indices and new diagnostic plots.

Project: http://gmwt.danielfischer.name
Cran: https://cran.r-project.org/web/packages/gMWT/
GitHub: https://github.com/fischuu/gMWT/
Publication: https://www.jstatsoft.org/article/view/v065i09

 

hoardeR: Information retrieval from National Center for Biotechnology Information (NCBI) databases, with main focus on identifying genes in unannotated organisms via Blast similarity search in annotated organisms.

Project: http://hoarder.danielfischer.name
Cran: https://cran.r-project.org/web/packages/hoardeR/
GitHub: https://github.com/fischuu/hoardeR/

 

Luke: Another loose connection of helpful, repeating functions.

Project: http://luke.danielfischer.name
GitHub: https://github.com/fischuu/Luke/

 

OjaNP: Functions to calculate the Oja median, Oja signs and ranks and methods based upon them.

Project: http://ojanp.danielfischer.name
Cran: https://cran.r-project.org/web/packages/OjaNP/
GitHub: https://github.com/fischuu/OjaNP/

 

REPPlab: An R Interface to ‘EPP-lab’ v1.0. ‘EPP-lab’ is a Java program for projection pursuit using genetic algorithms written by Alain Berro and S. Larabi Marie-Sainte and is included in the package. The ‘EPP-lab’ sources are available under https://github.com/fischuu/EPP-lab.git.

Project: http://repplab.danielfischer.name
Cran: https://cran.r-project.org/web/packages/REPPlab/
GitHub: https://github.com/fischuu/REPPlab/